Speaking as a pilot (rather than MT member), I always lose at least a few seconds every flight I make; every time ASX does a WX update, any time FSRealTime syncs the clock, any time I switch away and back to FSX... All these things tend to happen at least a few times during a flight.
The pause detection in the flight logger just seems to have a "hair trigger" and I see it as a small price to pay.
